1 files changed, 28 insertions, 5 deletions

diff --git a/src/training/trainer/train.py b/src/training/trainer/train.py
index bd6a491..fb49103 100644
--- a/src/training/trainer/train.py
+++ b/src/training/trainer/train.py
@@ -4,6 +4,7 @@ from pathlib import Path
 import time
 from typing import Dict, List, Optional, Tuple, Type
 
+from einops import rearrange
 from loguru import logger
 import numpy as np
 import torch
@@ -27,12 +28,18 @@ class Trainer:
 
     # TODO: proper add teardown?
 
-    def __init__(self, max_epochs: int, callbacks: List[Type[Callback]],) -> None:
+    def __init__(
+        self,
+        max_epochs: int,
+        callbacks: List[Type[Callback]],
+        transformer_model: bool = False,
+    ) -> None:
         """Initialization of the Trainer.
 
         Args:
             max_epochs (int): The maximum number of epochs in the training loop.
             callbacks (CallbackList): List of callbacks to be called.
+            transformer_model (bool): Transformer model flag, modifies the input to the model. Default is False.
 
         """
         # Training arguments.
@@ -43,6 +50,8 @@ class Trainer:
         # Flag for setting callbacks.
         self.callbacks_configured = False
 
+        self.transformer_model = transformer_model
+
         # Model placeholders
         self.model = None
 
@@ -97,10 +106,15 @@ class Trainer:
 
         # Forward pass.
         # Get the network prediction.
-        output = self.model.forward(data)
+        if self.transformer_model:
+            output = self.model.network.forward(data, targets[:, :-1])
+            output = rearrange(output, "b t v -> (b t) v")
+            targets = rearrange(targets[:, 1:], "b t -> (b t)").long()
+        else:
+            output = self.model.forward(data)
 
         # Compute the loss.
-        loss = self.model.loss_fn(output, targets)
+        loss = self.model.criterion(output, targets)
 
         # Backward pass.
         # Clear the previous gradients.
@@ -148,10 +162,15 @@ class Trainer:
         # Forward pass.
         # Get the network prediction.
         # Use SWA if available and using test dataset.
-        output = self.model.forward(data)
+        if self.transformer_model:
+            output = self.model.network.forward(data, targets[:, :-1])
+            output = rearrange(output, "b t v -> (b t) v")
+            targets = rearrange(targets[:, 1:], "b t -> (b t)").long()
+        else:
+            output = self.model.forward(data)
 
         # Compute the loss.
-        loss = self.model.loss_fn(output, targets)
+        loss = self.model.criterion(output, targets)
 
         # Compute metrics.
         metrics = self.compute_metrics(output, targets, loss, loss_avg)
@@ -237,6 +256,8 @@ class Trainer:
         # Configure callbacks.
         self._configure_callbacks()
 
+        self.callbacks.on_test_begin()
+
         self.model.eval()
 
         # Check if SWA network is available.
@@ -252,6 +273,8 @@ class Trainer:
             metrics = self.validation_step(batch, samples, loss_avg)
             summary.append(metrics)
 
+        self.callbacks.on_test_end()
+
         # Compute mean of all test metrics.
         metrics_mean = {
             "test_" + metric: np.mean([x[metric] for x in summary])