From 7e8e54e84c63171e748bbf09516fd517e6821ace Mon Sep 17 00:00:00 2001
From: Gustaf Rydholm <gustaf.rydholm@gmail.com>
Date: Sat, 20 Mar 2021 18:09:06 +0100
Subject: Inital commit for refactoring to lightning

---
 text_recognizer/networks/transformer/__init__.py   |   3 +
 text_recognizer/networks/transformer/attention.py  |  93 ++++++++
 .../networks/transformer/positional_encoding.py    |  32 +++
 .../networks/transformer/transformer.py            | 264 +++++++++++++++++++++
 4 files changed, 392 insertions(+)
 create mode 100644 text_recognizer/networks/transformer/__init__.py
 create mode 100644 text_recognizer/networks/transformer/attention.py
 create mode 100644 text_recognizer/networks/transformer/positional_encoding.py
 create mode 100644 text_recognizer/networks/transformer/transformer.py

(limited to 'text_recognizer/networks/transformer')

diff --git a/text_recognizer/networks/transformer/__init__.py b/text_recognizer/networks/transformer/__init__.py
new file mode 100644
index 0000000..9febc88
--- /dev/null
+++ b/text_recognizer/networks/transformer/__init__.py
@@ -0,0 +1,3 @@
+"""Transformer modules."""
+from .positional_encoding import PositionalEncoding
+from .transformer import Decoder, Encoder, EncoderLayer, Transformer
diff --git a/text_recognizer/networks/transformer/attention.py b/text_recognizer/networks/transformer/attention.py
new file mode 100644
index 0000000..cce1ecc
--- /dev/null
+++ b/text_recognizer/networks/transformer/attention.py
@@ -0,0 +1,93 @@
+"""Implementes the attention module for the transformer."""
+from typing import Optional, Tuple
+
+from einops import rearrange
+import numpy as np
+import torch
+from torch import nn
+from torch import Tensor
+
+
+class MultiHeadAttention(nn.Module):
+    """Implementation of multihead attention."""
+
+    def __init__(
+        self, hidden_dim: int, num_heads: int = 8, dropout_rate: float = 0.0
+    ) -> None:
+        super().__init__()
+        self.hidden_dim = hidden_dim
+        self.num_heads = num_heads
+        self.fc_q = nn.Linear(
+            in_features=hidden_dim, out_features=hidden_dim, bias=False
+        )
+        self.fc_k = nn.Linear(
+            in_features=hidden_dim, out_features=hidden_dim, bias=False
+        )
+        self.fc_v = nn.Linear(
+            in_features=hidden_dim, out_features=hidden_dim, bias=False
+        )
+        self.fc_out = nn.Linear(in_features=hidden_dim, out_features=hidden_dim)
+
+        self._init_weights()
+
+        self.dropout = nn.Dropout(p=dropout_rate)
+
+    def _init_weights(self) -> None:
+        nn.init.normal_(
+            self.fc_q.weight,
+            mean=0,
+            std=np.sqrt(self.hidden_dim + int(self.hidden_dim / self.num_heads)),
+        )
+        nn.init.normal_(
+            self.fc_k.weight,
+            mean=0,
+            std=np.sqrt(self.hidden_dim + int(self.hidden_dim / self.num_heads)),
+        )
+        nn.init.normal_(
+            self.fc_v.weight,
+            mean=0,
+            std=np.sqrt(self.hidden_dim + int(self.hidden_dim / self.num_heads)),
+        )
+        nn.init.xavier_normal_(self.fc_out.weight)
+
+    def scaled_dot_product_attention(
+        self, query: Tensor, key: Tensor, value: Tensor, mask: Optional[Tensor] = None
+    ) -> Tensor:
+        """Calculates the scaled dot product attention."""
+
+        # Compute the energy.
+        energy = torch.einsum("bhlk,bhtk->bhlt", [query, key]) / np.sqrt(
+            query.shape[-1]
+        )
+
+        # If we have a mask for padding some inputs.
+        if mask is not None:
+            energy = energy.masked_fill(mask == 0, -np.inf)
+
+        # Compute the attention from the energy.
+        attention = torch.softmax(energy, dim=3)
+
+        out = torch.einsum("bhlt,bhtv->bhlv", [attention, value])
+        out = rearrange(out, "b head l v -> b l (head v)")
+        return out, attention
+
+    def forward(
+        self, query: Tensor, key: Tensor, value: Tensor, mask: Optional[Tensor] = None
+    ) -> Tuple[Tensor, Tensor]:
+        """Forward pass for computing the multihead attention."""
+        # Get the query, key, and value tensor.
+        query = rearrange(
+            self.fc_q(query), "b l (head k) -> b head l k", head=self.num_heads
+        )
+        key = rearrange(
+            self.fc_k(key), "b t (head k) -> b head t k", head=self.num_heads
+        )
+        value = rearrange(
+            self.fc_v(value), "b t (head v) -> b head t v", head=self.num_heads
+        )
+
+        out, attention = self.scaled_dot_product_attention(query, key, value, mask)
+
+        out = self.fc_out(out)
+        out = self.dropout(out)
+        return out, attention
diff --git a/text_recognizer/networks/transformer/positional_encoding.py b/text_recognizer/networks/transformer/positional_encoding.py
new file mode 100644
index 0000000..1ba5537
--- /dev/null
+++ b/text_recognizer/networks/transformer/positional_encoding.py
@@ -0,0 +1,32 @@
+"""A positional encoding for the image features, as the transformer has no notation of the order of the sequence."""
+import numpy as np
+import torch
+from torch import nn
+from torch import Tensor
+
+
+class PositionalEncoding(nn.Module):
+    """Encodes a sense of distance or time for transformer networks."""
+
+    def __init__(
+        self, hidden_dim: int, dropout_rate: float, max_len: int = 1000
+    ) -> None:
+        super().__init__()
+        self.dropout = nn.Dropout(p=dropout_rate)
+        self.max_len = max_len
+
+        pe = torch.zeros(max_len, hidden_dim)
+        position = torch.arange(0, max_len).unsqueeze(1)
+        div_term = torch.exp(
+            torch.arange(0, hidden_dim, 2) * -(np.log(10000.0) / hidden_dim)
+        )
+
+        pe[:, 0::2] = torch.sin(position * div_term)
+        pe[:, 1::2] = torch.cos(position * div_term)
+        pe = pe.unsqueeze(0)
+        self.register_buffer("pe", pe)
+
+    def forward(self, x: Tensor) -> Tensor:
+        """Encodes the tensor with a postional embedding."""
+        x = x + self.pe[:, : x.shape[1]]
+        return self.dropout(x)
diff --git a/text_recognizer/networks/transformer/transformer.py b/text_recognizer/networks/transformer/transformer.py
new file mode 100644
index 0000000..dd180c4
--- /dev/null
+++ b/text_recognizer/networks/transformer/transformer.py
@@ -0,0 +1,264 @@
+"""Transfomer module."""
+import copy
+from typing import Dict, Optional, Type, Union
+
+import numpy as np
+import torch
+from torch import nn
+from torch import Tensor
+import torch.nn.functional as F
+
+from text_recognizer.networks.transformer.attention import MultiHeadAttention
+from text_recognizer.networks.util import activation_function
+
+
+class GEGLU(nn.Module):
+    """GLU activation for improving feedforward activations."""
+
+    def __init__(self, dim_in: int, dim_out: int) -> None:
+        super().__init__()
+        self.proj = nn.Linear(dim_in, dim_out * 2)
+
+    def forward(self, x: Tensor) -> Tensor:
+        """Forward propagation."""
+        x, gate = self.proj(x).chunk(2, dim=-1)
+        return x * F.gelu(gate)
+
+
+def _get_clones(module: Type[nn.Module], num_layers: int) -> nn.ModuleList:
+    return nn.ModuleList([copy.deepcopy(module) for _ in range(num_layers)])
+
+
+class _IntraLayerConnection(nn.Module):
+    """Preforms the residual connection inside the transfomer blocks and applies layernorm."""
+
+    def __init__(self, dropout_rate: float, hidden_dim: int) -> None:
+        super().__init__()
+        self.norm = nn.LayerNorm(normalized_shape=hidden_dim)
+        self.dropout = nn.Dropout(p=dropout_rate)
+
+    def forward(self, src: Tensor, residual: Tensor) -> Tensor:
+        return self.norm(self.dropout(src) + residual)
+
+
+class _ConvolutionalLayer(nn.Module):
+    def __init__(
+        self,
+        hidden_dim: int,
+        expansion_dim: int,
+        dropout_rate: float,
+        activation: str = "relu",
+    ) -> None:
+        super().__init__()
+
+        in_projection = (
+            nn.Sequential(
+                nn.Linear(hidden_dim, expansion_dim), activation_function(activation)
+            )
+            if activation != "glu"
+            else GEGLU(hidden_dim, expansion_dim)
+        )
+
+        self.layer = nn.Sequential(
+            in_projection,
+            nn.Dropout(p=dropout_rate),
+            nn.Linear(in_features=expansion_dim, out_features=hidden_dim),
+        )
+
+    def forward(self, x: Tensor) -> Tensor:
+        return self.layer(x)
+
+
+class EncoderLayer(nn.Module):
+    """Transfomer encoding layer."""
+
+    def __init__(
+        self,
+        hidden_dim: int,
+        num_heads: int,
+        expansion_dim: int,
+        dropout_rate: float,
+        activation: str = "relu",
+    ) -> None:
+        super().__init__()
+        self.self_attention = MultiHeadAttention(hidden_dim, num_heads, dropout_rate)
+        self.cnn = _ConvolutionalLayer(
+            hidden_dim, expansion_dim, dropout_rate, activation
+        )
+        self.block1 = _IntraLayerConnection(dropout_rate, hidden_dim)
+        self.block2 = _IntraLayerConnection(dropout_rate, hidden_dim)
+
+    def forward(self, src: Tensor, mask: Optional[Tensor] = None) -> Tensor:
+        """Forward pass through the encoder."""
+        # First block.
+        # Multi head attention.
+        out, _ = self.self_attention(src, src, src, mask)
+
+        # Add & norm.
+        out = self.block1(out, src)
+
+        # Second block.
+        # Apply 1D-convolution.
+        cnn_out = self.cnn(out)
+
+        # Add & norm.
+        out = self.block2(cnn_out, out)
+
+        return out
+
+
+class Encoder(nn.Module):
+    """Transfomer encoder module."""
+
+    def __init__(
+        self,
+        num_layers: int,
+        encoder_layer: Type[nn.Module],
+        norm: Optional[Type[nn.Module]] = None,
+    ) -> None:
+        super().__init__()
+        self.layers = _get_clones(encoder_layer, num_layers)
+        self.norm = norm
+
+    def forward(self, src: Tensor, src_mask: Optional[Tensor] = None) -> Tensor:
+        """Forward pass through all encoder layers."""
+        for layer in self.layers:
+            src = layer(src, src_mask)
+
+        if self.norm is not None:
+            src = self.norm(src)
+
+        return src
+
+
+class DecoderLayer(nn.Module):
+    """Transfomer decoder layer."""
+
+    def __init__(
+        self,
+        hidden_dim: int,
+        num_heads: int,
+        expansion_dim: int,
+        dropout_rate: float = 0.0,
+        activation: str = "relu",
+    ) -> None:
+        super().__init__()
+        self.hidden_dim = hidden_dim
+        self.self_attention = MultiHeadAttention(hidden_dim, num_heads, dropout_rate)
+        self.multihead_attention = MultiHeadAttention(
+            hidden_dim, num_heads, dropout_rate
+        )
+        self.cnn = _ConvolutionalLayer(
+            hidden_dim, expansion_dim, dropout_rate, activation
+        )
+        self.block1 = _IntraLayerConnection(dropout_rate, hidden_dim)
+        self.block2 = _IntraLayerConnection(dropout_rate, hidden_dim)
+        self.block3 = _IntraLayerConnection(dropout_rate, hidden_dim)
+
+    def forward(
+        self,
+        trg: Tensor,
+        memory: Tensor,
+        trg_mask: Optional[Tensor] = None,
+        memory_mask: Optional[Tensor] = None,
+    ) -> Tensor:
+        """Forward pass of the layer."""
+        out, _ = self.self_attention(trg, trg, trg, trg_mask)
+        trg = self.block1(out, trg)
+
+        out, _ = self.multihead_attention(trg, memory, memory, memory_mask)
+        trg = self.block2(out, trg)
+
+        out = self.cnn(trg)
+        out = self.block3(out, trg)
+
+        return out
+
+
+class Decoder(nn.Module):
+    """Transfomer decoder module."""
+
+    def __init__(
+        self,
+        decoder_layer: Type[nn.Module],
+        num_layers: int,
+        norm: Optional[Type[nn.Module]] = None,
+    ) -> None:
+        super().__init__()
+        self.layers = _get_clones(decoder_layer, num_layers)
+        self.num_layers = num_layers
+        self.norm = norm
+
+    def forward(
+        self,
+        trg: Tensor,
+        memory: Tensor,
+        trg_mask: Optional[Tensor] = None,
+        memory_mask: Optional[Tensor] = None,
+    ) -> Tensor:
+        """Forward pass through the decoder."""
+        for layer in self.layers:
+            trg = layer(trg, memory, trg_mask, memory_mask)
+
+        if self.norm is not None:
+            trg = self.norm(trg)
+
+        return trg
+
+
+class Transformer(nn.Module):
+    """Transformer network."""
+
+    def __init__(
+        self,
+        num_encoder_layers: int,
+        num_decoder_layers: int,
+        hidden_dim: int,
+        num_heads: int,
+        expansion_dim: int,
+        dropout_rate: float,
+        activation: str = "relu",
+    ) -> None:
+        super().__init__()
+
+        # Configure encoder.
+        encoder_norm = nn.LayerNorm(hidden_dim)
+        encoder_layer = EncoderLayer(
+            hidden_dim, num_heads, expansion_dim, dropout_rate, activation
+        )
+        self.encoder = Encoder(num_encoder_layers, encoder_layer, encoder_norm)
+
+        # Configure decoder.
+        decoder_norm = nn.LayerNorm(hidden_dim)
+        decoder_layer = DecoderLayer(
+            hidden_dim, num_heads, expansion_dim, dropout_rate, activation
+        )
+        self.decoder = Decoder(decoder_layer, num_decoder_layers, decoder_norm)
+
+        self._reset_parameters()
+
+    def _reset_parameters(self) -> None:
+        for p in self.parameters():
+            if p.dim() > 1:
+                nn.init.xavier_uniform_(p)
+
+    def forward(
+        self,
+        src: Tensor,
+        trg: Tensor,
+        src_mask: Optional[Tensor] = None,
+        trg_mask: Optional[Tensor] = None,
+        memory_mask: Optional[Tensor] = None,
+    ) -> Tensor:
+        """Forward pass through the transformer."""
+        if src.shape[0] != trg.shape[0]:
+            print(trg.shape)
+            raise RuntimeError("The batch size of the src and trg must be the same.")
+        if src.shape[2] != trg.shape[2]:
+            raise RuntimeError(
+                "The number of features for the src and trg must be the same."
+            )
+
+        memory = self.encoder(src, src_mask)
+        output = self.decoder(trg, memory, trg_mask, memory_mask)
+        return output
-- 
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